jMorp User Guide
Attention
This document is a work-in-progress document explaining how to use the jMorp website, and some pages may not be fully described. We are updating it as needed.
Attention
The English version of the jMorp User Guide was generated based on a machine translation of the Japanese version . There could be some incorrect sentences.
Table of contents
- 1. Overview of jMorp
- 2. How to use jMorp website
- 2.1. Gene page
- 2.1.1. Gene information panel
- 2.1.2. SNV/INDEL panel
- 2.1.3. SNV/INDEL density panel
- 2.1.4. CNV panel
- 2.1.5. STR Panel
- 2.1.6. Methylation information panel
- 2.1.7. Gene expression panel (ToMMo whole blood)
- 2.1.8. Gene expression panel (IMM 3cell analysis)
- 2.1.9. Gene expression panel (ToMMo ISO-Seq)
- 2.1.10. Genome browser panel
- 2.1.11. GWAS analysis results panel
- 2.1.12. HLA allerle frequency panel
- 2.1.13. PGx panel
- 2.2. SNV/INDEL page
- 2.3. SNV/INDEL allele frequency comparison tool
- 2.4. SNV/INDEL protein structure mapping tool
- 2.5. CNV page
- 2.6. STR Page
- 2.7. Genome Browser
- 2.8. Metabolite page
- 2.9. Metabolite Correlation Network Viewer
- 2.10. MRI page
- 2.11. PGx page
- 2.12. Metagenome page
- 2.13. GWAS page
- 2.14. Download page
- 2.15. Tips: how to work with DataTable
- 2.16. Tips: Preference page
- 2.1. Gene page
- 3. Details of datasets included in jMorp
- 3.1. JG2.1.0
- 3.2. JG3.0.0
- 3.3. 38KJPN-SNV/INDEL
- 3.4. 54KJPN-SNV/INDEL
- 3.5. 60KJPN-SNV/INDEL
- 3.6. 8.3KJPN mtDNA variants panel
- 3.7. 38KJPN-HLA
- 3.8. 54KJPN-HLA (v20230626)
- 3.9. 54KJPN-HLA (v20230828)
- 3.10. 60KJPN-HLA (v20240904)
- 3.11. 54KJPN-STR
- 3.12. 60KJPN-STR
- 3.13. JCNVv1
- 3.14. 8.3KJPN-SV
- 3.15. JSV1
- 3.16. ToMMo whole blood transcriptome (v20230828)
- 3.17. ToMMo ISO-Seq
- 3.18. IMM 3cell analysis
- 3.19. IMM cord blood
- 3.20. Proteome
- 3.21. Metabolome 2022
- 3.22. Metabolome 2023
- 3.23. Metabolome 2024
- 3.24. MRI (v20240325)
- 3.25. PGx
- 3.26. Metagenome 16S-v4
- 3.27. Metagenome 16S-v3/v4
- 3.28. Metagenome shotgun
- 3.29. Data other than TMM analysis data