3.29. Data other than TMM analysis data
jMorp uses the following public databases for annotating data analyzed by TMM, such as 38KJPN.
Database name |
References |
Version |
Source |
---|---|---|---|
ClinVar |
Landrum et al. [25] |
2022-07-30 |
|
dbSNP |
Sayers et al. [26] |
155 |
|
gnomAD |
Karczewski et al. [14] |
3.1.2 (GRCh38 Genome), 2.1.1 (GRCh37 Genome, Exome) |
|
dbNSFP |
4.3c |
||
RefSeq (gene annotation) |
O'Leary et al. [27] |
110 (GRCh38), 105.20220307 (GRCh38) |
|
RefSeq Entrez Gene Info |
20220627 |
||
RefSeq to UniProt |
20220627 |
||
GENCODE |
Frankish et al. [28] |
40 |
|
UniProt ID mapping |
Consortium [29] |
downloaded at 2022-09-09 |