3.6. 61KJPN-SNV/INDEL

Dataset category

Genome Variation

Overview

SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 61,000 Japanese individuals

References

  • Tadaka et al. [2]

Samples analyzed

Blood (buffy coat), saliva

Number of samples (by analysis platform)

Analysis platform

Male

Female

Total

Illumina HiSeq 2500 (162PE)

1,314

1,559

2,873

Illumina HiSeq 2500 (259PE) *1

107

174

281

Illumina HiSeq X Five (150PE) *1

31

34

65

Illumina NovaSeq 6000 (150PE) *2

4,209

14,271

18,480

Illumina NovaSeq 6000 (151PE) *2

1,495

2,224

3,719

Illumina NovaSeq 6000 (161PE)

9,182

15,415

24,597

Illumina NovaSeq X Plus (161PE)

922

2,553

3,475

MGI DNBSeq G400 (150PE) *1

528

560

1,088

MGI DNBSeq T7 (150PE)

2,954

3,892

6,846

Total

20,742

40,682

61,424

[1] Due to the small sample size, frequency information is not displayed on the jMorp Web site and in the downloadable files.

[2] On the jMorp Web site and in downloadable files, 150PE and 151PE are combined and referred to as 150PE.

Number of samples (by age)

Age

Male

Female

Total

19 and below

726

724

1,440

20s

1,347

5,851

7,198

30s

3,263

10,398

13,661

40s

1,862

3,780

5,642

50s

2,143

5,471

7,614

60s

7,525

10,635

18,160

70s

3,770

3,742

7,512

over 80

106

81

187

Total

20,742

40,682

61,424
Related pages on the jMorp website