3.5. 54KJPN-HLA (v20230626)

Dataset category

Genome Variation

Overview

HLA allele frequency data obtained from short-read whole genome sequencing of about 54,000 Japanese individuals

Samples analyzed

Blood (Buffy coat), saliva

Number of samples (by analysis platform)

Note

Although the target population of this analysis is the same as the 54KJPN-SNV/INDEL, two samples were excluded due to exceeding designated computational time or memory usage limits, resulting in the number of samples comprising the analysis being two fewer than that of the 54KJPN-SNV/INDEL.

Analysis platform

Male

Female

Total

Illumina HiSeq 2500 (162PE)

1,450

1,677

3,127

Illumina HiSeq 2500 (259PE)

142

189

331

Illumina HiSeq X Five (150PE)

32

35

67

Illumina NovaSeq 6000 (150PE)

4,913

15,387

20,300

Illumina NovaSeq 6000 (151PE)

1,605

2,301

3,906

Illumina NovaSeq 6000 (161PE)

6,289

11,624

17,913

MGI DNBSeq G400 (150PE)

620

671

1,291

MGI DNBSeq T7 (150PE)

3,210

4,155

7,365

Total

18,261

36,039

54,300
Number of samples (by age)

Age

Male

Female

Total

19 and below

233

1292

525

20s

1,099

5,817

6,916

30s

2,864

10,024

12,888

40s

1,685

3,037

4,722

50s

2,030

4,420

6,450

60s

7,047

9,329

16,376

70s

3,246

3,077

6,223

80 and above

57

43

100

Total

18,261

36,039

54,300
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