3.5. 60KJPN-SNV/INDEL

Dataset category

Genome Variation

Overview

SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 60,000 Japanese individuals

References

  • Tadaka et al. [2]

Samples analyzed

Blood (buffy coat), saliva

Number of samples (by analysis platform)

Analysis Platform

Male

Female

合計

Illumina HiSeq 2500 (162PE)

1,425

1,652

3,077

Illumina HiSeq 2500 (259PE) *1

139

182

321

Illumina HiSeq X Five (150PE) *1

32

35

67

Illumina NovaSeq 6000 (150PE) *2

4,911

15,201

20,112

Illumina NovaSeq 6000 (151PE) *2

1,629

2,357

3,986

Illumina NovaSeq 6000 (161PE)

9,213

14,649

23,862

MGI DNBSeq G400 (150PE) *1

600

641

1241

MGI DNBSeq T7 (150PE)

3,179

4,095

7,274

合計

21,128

38,812

59,940

[1] Due to the small sample size, frequency information is not displayed on the jMorp Web site and in the downloadable files.

[2] On the jMorp Web site and in downloadable files, 150PE and 151PE are combined and referred to as 150PE.

Number of samples (by age)

Age

Male

Female

合計

19 and below

533

549

1,082

20s

1,695

5,826

7,521

30s

3,915

10,360

14,275

40s

1,932

3,469

5,401

50s

2,165

5,178

7,343

60s

7,462

10,158

17,620

70s

3,366

3,227

6,593

over 80

60

45

105

合計

21,128

38,812

59,940
Related pages on the jMorp website