3.3. 38KJPN-SNV/INDEL

Dataset category

Genome Variation

Summary

SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 38,000 Japanese individuals

References
  • Tadaka et al. [2]

Samples analyzed

Blood (buffy coat), saliva

Number of samples (by analysis Platform)

Analysis platform

Male

Female

Total

Illumina HiSeq 2500 (162PE)

1,337

1,555

2,892

Illumina HiSeq 2500 (259PE)

136

189

325

Illumina HiSeq X Five (150PE)

31

32

63

Illumina NovaSeq 6000 (150PE)

3,888

13,519

17,407

Illumina NovaSeq 6000 (151PE)

467

703

1,170

Illumina NovaSeq 6000 (161PE)

1,858

6,888

8,746

MGI DNBSeq G400 (150PE)

587

656

1,243

MGI DNBSeq T7 (150PE)

2,977

3,899

6,876

Total

11,281

27,441

38,722

Number of samples (by age)

Age

Male

Female

Total

19 and below

39

102

141

20s

928

5,444

6,372

30s

2,483

9,376

11,859

40s

1,110

2,370

3,480

50s

1,074

2,906

3,980

60s

3,860

5,535

9,395

70s

1,737

1,675

3,412

80 and above

50

33

83

Total

11,281

27,441

38,722

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