3.2. 38KJPN-SNV/INDEL
- Dataset category
Genome Variation
- Summary
SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 38,000 Japanese individuals
- References
Tadaka et al. [2]
- Samples analyzed
Blood (buffy coat), saliva
- Number of samples (by analysis Platform)
Analysis platform
Male
Female
Total
Illumina HiSeq 2500 (162PE)
1,337
1,555
2,892
Illumina HiSeq 2500 (259PE)
136
189
325
Illumina HiSeq X Five (150PE)
31
32
63
Illumina NovaSeq 6000 (150PE)
3,888
13,519
17,407
Illumina NovaSeq 6000 (151PE)
467
703
1,170
Illumina NovaSeq 6000 (161PE)
1,858
6,888
8,746
MGI DNBSeq G400 (150PE)
587
656
1,243
MGI DNBSeq T7 (150PE)
2,977
3,899
6,876
Total
11,281
27,441
38,722
- Number of samples (by age)
Age
Male
Female
Total
19 and below
39
102
141
20s
928
5,444
6,372
30s
2,483
9,376
11,859
40s
1,110
2,370
3,480
50s
1,074
2,906
3,980
60s
3,860
5,535
9,395
70s
1,737
1,675
3,412
80 and above
50
33
83
Total
11,281
27,441
38,722
- Related pages on the jMorp website