3.4. 54KJPN-SNV/INDEL

Dataset category

Genome Variation

Overview

SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 54,000 Japanese individuals

References
  • Tadaka et al. [2]

Samples analyzed

Blood (buffy coat), saliva

Number of samples (by analysis platform)

Analysis platform

Male

Female

Total

Illumina HiSeq 2500 (162PE)

1,450

1,677

3,127

Illumina HiSeq 2500 (259PE)

142

189

331

Illumina HiSeq X Five (150PE)

32

35

67

Illumina NovaSeq 6000 (150PE)

4,913

15,387

20,300

Illumina NovaSeq 6000 (151PE)

1,605

2,301

3,906

Illumina NovaSeq 6000 (161PE)

6,291

11,624

17,915

MGI DNBSeq G400 (150PE)

620

671

1,291

MGI DNBSeq T7 (150PE)

3,210

4,155

7,365

Total

18,263

36,039

54,302

Number of samples (by age)

Age

Male

Female

Total

19 and below

233

1292

525

20s

1,099

5,817

6,916

30s

2,865

10,024

12,889

40s

1,686

3,037

4,723

50s

2,030

4,420

6,450

60s

7,047

9,329

16,376

70s

3,246

3,077

6,223

80s

57

43

100

Total

18,263

36,039

54,302

Related pages on the jMorp website