3.4. 54KJPN-SNV/INDEL
- Dataset category
Genome Variation
- Overview
SNV/INDEL allele frequency and genotype frequency data obtained from short-read whole genome sequencing of about 54,000 Japanese individuals
- References
Tadaka et al. [2]
- Samples analyzed
Blood (buffy coat), saliva
- Number of samples (by analysis platform)
Analysis platform
Male
Female
Total
Illumina HiSeq 2500 (162PE)
1,450
1,677
3,127
Illumina HiSeq 2500 (259PE) [1]
142
189
331
Illumina HiSeq X Five (150PE) [1]
32
35
67
Illumina NovaSeq 6000 (150PE) [2]
4,913
15,387
20,300
Illumina NovaSeq 6000 (151PE) [2]
1,605
2,301
3,906
Illumina NovaSeq 6000 (161PE)
6,291
11,624
17,915
MGI DNBSeq G400 (150PE) [1]
620
671
1,291
MGI DNBSeq T7 (150PE)
3,210
4,155
7,365
Total
18,263
36,039
54,302
[1] Due to the small sample size, frequency information is not displayed on the jMorp Web site and in the downloadable files.
[2] On the jMorp Web site and in downloadable files, 150PE and 151PE are combined and referred to as 150PE.
- Number of samples (by age)
Age
Male
Female
Total
19 and below
233
1292
525
20s
1,099
5,817
6,916
30s
2,865
10,024
12,889
40s
1,686
3,037
4,723
50s
2,030
4,420
6,450
60s
7,047
9,329
16,376
70s
3,246
3,077
6,223
80s
57
43
100
Total
18,263
36,039
54,302
- Related pages on the jMorp website